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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14057346_14058043_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14057346 - 14058043
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTCTTGTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATATTTAATT
Flanking Amino Acid:
KVKALEEELYKQDGLDSKAD
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.8
0.6
0.8
72.4
32.4
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
68.4
0.66
1.4
80.25
35.4

Associated Gene:

Gene:
GFPT2
Ensembl Gene ID:
ENSAPLG00000012941
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013529
14051776 - 14069798
18023