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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14059413_14060924_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
14059413 - 14060924
Intron Length:
1512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCATGGTGTCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GACTTAT
U12 Branch Point Sequence:
TAGGACTTATTT
Flanking Amino Acid:
ALVERVIQQLEGAFALVFKS
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
68.8
42.2
Major BPS
65.9
0.39
1.2
57.6
41.3
Major PPT
58.8
0.2
1
49.7
43.7
Minor 5ss
32.2
-2
3.1
37.3
42.5
Minor BPS
48.8
-0
1.9
65.81
45

Associated Gene:

Gene:
GFPT2
Ensembl Gene ID:
ENSAPLG00000012941
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013529
14051776 - 14069798
18023