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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14062660_14062980_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14062660 - 14062980
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GCTTCTTTAATT
Flanking Amino Acid:
TEQIPVLYRTCNIENVKNMC
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.1
0.63
1
73.7
40.2
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
78.5
0.97
1.1
84.22
37.1

Associated Gene:

Gene:
GFPT2
Ensembl Gene ID:
ENSAPLG00000012941
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013529
14051776 - 14069798
18023