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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14064181_14064284_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14064181 - 14064284
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTGTTTTATT
Flanking Amino Acid:
RGRVNFESSTVLLGGLKDHL
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.6
0.82
0.8
81
35.3
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
59.2
0.37
2
83.31
38.3

Associated Gene:

Gene:
GFPT2
Ensembl Gene ID:
ENSAPLG00000012941
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013529
14051776 - 14069798
18023