About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14067066_14067470_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14067066 - 14067470
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
AAACTATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTCACTTAACA
Flanking Amino Acid:
NALQQVTARQGRPIILCSKE
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
77.5
0.68
1
79.6
33
Major PPT
71.5
0.48
1
66.9
43
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
70.9
0.65
1.5
78.12
38.1

Associated Gene:

Gene:
GFPT2
Ensembl Gene ID:
ENSAPLG00000012941
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013529
14051776 - 14069798
18023