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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14074901_14079267_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
14074901 - 14079267
Intron Length:
4367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGAAAACTTCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTTTTGAAAA
Flanking Amino Acid:
PIGSGAQGIVCAAFDTVLGI
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
59.7
0.22
1
48.5
44.6
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
58.9
0.27
1.5
68.73
37.7

Associated Gene:

Gene:
MAPK9
Ensembl Gene ID:
ENSAPLG00000013460
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014054
14074726 - 14091115
16390