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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14079398_14080102_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14079398 - 14080102
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
VLLKCVNHKNIISLLNVFTP
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.7
0.87
0.6
84.5
23.4
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
MAPK9
Ensembl Gene ID:
ENSAPLG00000013460
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014054
14074726 - 14091115
16390