About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14080980_14082152_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
14080980 - 14082152

Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGA|GTAGGTAGT

5'SS Class:
major

3'SS Sequence:
AATTTCTTGTTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AAATAAT

U12 Branch Point Sequence:
CCTTCCTTAACT

Flanking Amino Acid:
HLHSAGIIHRDLKPSNIVVK

Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
67.5
0.41
1.1
66.4
45.1

Major BPS
71.2
0.53
1
70.3
31.9

Major PPT
70.8
0.47
1
70.8
40.1

Minor 5ss
37.3
-1.4
3.1
47
42.7

Minor BPS
87
1.25
1
91.67
38.1

Associated Gene:

Gene:
MAPK9

Ensembl Gene ID:

Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

14074726 - 14091115
16390