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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14082319_14083566_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14082319 - 14083566
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCATTTTTACTT
Flanking Amino Acid:
VILGMGYKENVDIWSVGCIM
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
91.7
0.94
0.7
89.8
25.4
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
58
0.33
1.6
71.31
40.8

Associated Gene:

Gene:
MAPK9
Ensembl Gene ID:
ENSAPLG00000013460
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014054
14074726 - 14091115
16390