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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14083639_14087728_F

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
14083639 - 14087728
Intron Length:
4090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
AGATATGGTGCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTTCCTAAAGA
Flanking Amino Acid:
KGCVIFQGTDHIDQWNKVIE
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
47.9
-0.1
1.4
49.4
42.4
Major BPS
77.3
0.68
1
81.5
27
Major PPT
58.4
0.19
1.2
50.8
47
Minor 5ss
90.3
1.36
0.9
85
24.7
Minor BPS
68.7
0.58
2
83.03
38.2

Associated Gene:

Gene:
MAPK9
Ensembl Gene ID:
ENSAPLG00000013460
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014054
14074726 - 14091115
16390