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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14087912_14088573_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14087912 - 14088573
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCAA
5'SS Class:
major
3'SS Sequence:
TTTTACTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATTT
Flanking Amino Acid:
PSESDRDKLKTSQARDLLSK
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
68.6
38
Major BPS
100
1.24
0.5
100
0
Major PPT
85.1
0.79
0.7
77.9
36.2
Minor 5ss
31.8
-2.1
3.3
38.6
40.8
Minor BPS
57
0.3
1.7
79.21
37.8

Associated Gene:

Gene:
MAPK9
Ensembl Gene ID:
ENSAPLG00000013460
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014054
14074726 - 14091115
16390