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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14088699_14089146_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14088699 - 14089146
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TAATAGGTAAAT
Flanking Amino Acid:
VWYDPAEAEAPPPQIYDAQL
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
72.1
40.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
88.4
0.86
0.6
84.8
22.9
Minor 5ss
46.7
-0.3
2.8
68.2
42.5
Minor BPS
41.2
-0.5
2.6
64.53
45

Associated Gene:

Gene:
MAPK9
Ensembl Gene ID:
ENSAPLG00000013460
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014054
14074726 - 14091115
16390