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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14090182_14090972_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14090182 - 14090972
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTAGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTACTTAGCA
Flanking Amino Acid:
KNGVVKDQPSDAAVNSNTSP
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
1.1
79.1
36.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.1
0.45
1
65.4
39.7
Minor 5ss
32.2
-2
2.8
41.7
44.8
Minor BPS
65.6
0.49
1.8
77.7
38.6

Associated Gene:

Gene:
MAPK9
Ensembl Gene ID:
ENSAPLG00000013460
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014054
14074726 - 14091115
16390