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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14188746_14230423_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14188746 - 14230423
Intron Length:
41678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TTTGCCTGATGT
Flanking Amino Acid:
WTAAGAARSWEGMPQTLTST
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
84.9
0.78
0.8
80.1
31.9
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
49.9
0.08
2.1
76.58
45.8

Associated Gene:

Gene:
RASGEF1C
Ensembl Gene ID:
ENSAPLG00000015248
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015907
14188329 - 14254346
66018