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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14230607_14232227_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14230607 - 14232227
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCCAT
5'SS Class:
major
3'SS Sequence:
CTTTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTGAC
U12 Branch Point Sequence:
GTGTGCTTGACT
Flanking Amino Acid:
LIPTTDYYPEKAYIFTFLLS
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
71.6
40.1
Major BPS
56.2
0.15
1.3
51
44.3
Major PPT
84.5
0.78
0.7
79.8
25.8
Minor 5ss
41.2
-1
3.2
56.8
41.8
Minor BPS
65.1
0.56
1.8
79.87
42.4

Associated Gene:

Gene:
RASGEF1C
Ensembl Gene ID:
ENSAPLG00000015248
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015907
14188329 - 14254346
66018