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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14232351_14234911_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14232351 - 14234911
Intron Length:
2561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTGCATCATTC
Flanking Amino Acid:
QRLDDPVLDKARIRKFGPKI
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
72.7
38.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.8
0.72
0.8
78.4
34.7
Minor 5ss
30.9
-2.2
2.6
34.6
40.9
Minor BPS
43.9
-0.4
2
56.58
42

Associated Gene:

Gene:
RASGEF1C
Ensembl Gene ID:
ENSAPLG00000015248
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015907
14188329 - 14254346
66018