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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14240460_14241521_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14240460 - 14241521
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTAGG
5'SS Class:
major
3'SS Sequence:
TCCCCTCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCCCCTCTAATA
Flanking Amino Acid:
LAQQLTHVELERLSHIGPEE
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.6
45.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
69.3
0.43
0.8
65.4
29
Minor 5ss
34.2
-1.8
2.9
39.3
41.1
Minor BPS
51.7
0.05
1.7
60.86
39.9

Associated Gene:

Gene:
RASGEF1C
Ensembl Gene ID:
ENSAPLG00000015248
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015907
14188329 - 14254346
66018