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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14241597_14244614_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14241597 - 14244614
Intron Length:
3018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
ATGCAATTACAA
Flanking Amino Acid:
VHKDPLDGTKPCFSEQKKTS
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
77.2
37.7
Major BPS
64.7
0.37
1
73
31.5
Major PPT
81.6
0.71
0.8
73.7
36.9
Minor 5ss
44
-0.7
3.1
65.1
46.1
Minor BPS
41.4
-0.6
2
51.13
39.5

Associated Gene:

Gene:
RASGEF1C
Ensembl Gene ID:
ENSAPLG00000015248
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015907
14188329 - 14254346
66018