About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14246072_14246539_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14246072 - 14246539
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTGTTCTAACC
Flanking Amino Acid:
VKTAKFFILEHQMDPTGNFY
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80
27.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.9
0.54
1
66.6
44.3
Minor 5ss
31.4
-2.1
3.2
39.9
46.1
Minor BPS
53.7
0.09
1.8
67.01
38.8

Associated Gene:

Gene:
RASGEF1C
Ensembl Gene ID:
ENSAPLG00000015248
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015907
14188329 - 14254346
66018