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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14246636_14249909_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14246636 - 14249909
Intron Length:
3274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
SLTAHSNREKIVIPFFSLLI
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
RASGEF1C
Ensembl Gene ID:
ENSAPLG00000015248
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015907
14188329 - 14254346
66018