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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14251562_14253459_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14251562 - 14253459
Intron Length:
1898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTACCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CGTTTTTTACCT
Flanking Amino Acid:
LHTAPIFTEDGLYLASYESE
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
69.6
36.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.2
0.79
0.8
79.8
31.9
Minor 5ss
31.4
-2.1
3.1
36.2
41.7
Minor BPS
61.3
0.43
1.6
75.46
41.9

Associated Gene:

Gene:
RASGEF1C
Ensembl Gene ID:
ENSAPLG00000015248
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015907
14188329 - 14254346
66018