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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14253533_14253924_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14253533 - 14253924
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCACT
5'SS Class:
major
3'SS Sequence:
TTTAAATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATGTTTTAAAT
Flanking Amino Acid:
QTEKDRWKSLRSTILGKT*
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
75.3
40.8
Major BPS
100
1.24
0.5
100
0
Major PPT
80.8
0.69
0.9
74.1
40.1
Minor 5ss
47.6
-0.2
2.6
67.7
43
Minor BPS
63.9
0.51
1.5
77.65
38.8

Associated Gene:

Gene:
RASGEF1C
Ensembl Gene ID:
ENSAPLG00000015248
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015907
14188329 - 14254346
66018