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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14267888_14268951_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14267888 - 14268951
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAGAC
5'SS Class:
major
3'SS Sequence:
AATATATTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTCACTTAAAA
Flanking Amino Acid:
KHYKPNHVSESHYLDDRAIN
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
63
35.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.5
0.57
1
70.9
43.5
Minor 5ss
29
-2.4
3.6
40.9
45.7
Minor BPS
64
0.44
1.6
74.36
36

Associated Gene:

Gene:
CLK4
Ensembl Gene ID:
ENSAPLG00000014787
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015477
14267045 - 14275998
8954