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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14272715_14272803_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14272715 - 14272803
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTCAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTCTTTCAAG
Flanking Amino Acid:
HLNTMDPSSTFRCVQMLEWF
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
76.2
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
80.3
0.68
1
79.3
33
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
54
-0
2
63.96
44.2

Associated Gene:

Gene:
CLK4
Ensembl Gene ID:
ENSAPLG00000014787
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047253
14268309 - 14275998
7690
ENSAPLT00000015477
14267045 - 14275998
8954