Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14274772_14275179_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14274772 - 14275179

Intron Length:

408

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTATG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCACACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TTTTTTTCCACA

Flanking Amino Acid:

EYYLGFTVFQTHDSKEHLAM

Intron Amino Acid Position:

397

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

79.6

35.4

Major BPS

79.7

0.74

79.6

35.6

Major PPT

81.7

0.71

0.8

77.4

30.3

Minor 5ss

-1.1

2.7

50.1

46.4

Minor BPS

55.3

0.16

74.67

37.4

Associated Gene:

Gene:

CLK4

Ensembl Gene ID:

ENSAPLG00000014787

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047253

14268309 - 14275998

7690

ENSAPLT00000015477

14267045 - 14275998

8954