About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1440124_1495618_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1440124 - 1495618
Intron Length:
55495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTATAATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTATAATT
Flanking Amino Acid:
SIDMVSEVNMDYTLTMYFQQ
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.1
0.7
0.9
74.3
39.2
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
64.2
0.52
1.5
80.97
34.8

Associated Gene:

Gene:
GABRB2
Ensembl Gene ID:
ENSAPLG00000013041
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037347
1337553 - 1497996
160444
ENSAPLT00000029832
1339234 - 1497996
158763
ENSAPLT00000022851
1339234 - 1497996
158763
ENSAPLT00000045901
1337553 - 1497996
160444
ENSAPLT00000041017
1339234 - 1574652
235419