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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14433468_14434425_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14433468 - 14434425
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCGTGCTCATGC
Flanking Amino Acid:
YDGRILDALKGSPGPPGPPG
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
83.4
0.75
0.9
80.8
36.8
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
40.4
-0.7
2.3
49.71
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014525
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015174
14427191 - 14444382
17192
ENSAPLT00000040570
14427191 - 14440043
12853