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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14439063_14439719_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14439063 - 14439719
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCCGTTGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTCCTGATTT
Flanking Amino Acid:
KGEKSERGEKGERGIPGRKG
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
64
0.32
1.1
59.2
40.8
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
63.9
0.51
1.7
81.89
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014525
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040570
14427191 - 14440043
12853
ENSAPLT00000015174
14427191 - 14444382
17192