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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14443433_14444379_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14443433 - 14444379
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTCTCTTGATC
Flanking Amino Acid:
GLPVAGCWHK*
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
72.3
0.68
1.1
78.62
30.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014525
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015174
14427191 - 14444382
17192