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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14455507_14456336_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14455507 - 14456336
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
AAACCCTAAAAC
Flanking Amino Acid:
YLDCINNVAHVGHCHPDVVK
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
32.6
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
81.6
0.71
0.7
75.8
26.2
Minor 5ss
41
-1
2.7
51.5
44.9
Minor BPS
49.6
-0
1.8
58.3
39.5

Associated Gene:

Gene:
PHYKPL
Ensembl Gene ID:
ENSAPLG00000014272
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014876
14453485 - 14462476
8992