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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14457197_14458003_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14457197 - 14458003
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
ATTGTTTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATCTCCTGATTG
Flanking Amino Acid:
TKHQDVIVLDHAYHGHLTSL
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
75.8
0.58
1.1
79.7
37.4
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
51.5
-0
1.8
58.49
43.5

Associated Gene:

Gene:
PHYKPL
Ensembl Gene ID:
ENSAPLG00000014272
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014876
14453485 - 14462476
8992