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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14458092_14458205_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14458092 - 14458205
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GATATATTAAAT
Flanking Amino Acid:
LEGQKEWVHVAPVPDTYRGL
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73.3
35.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
75.6
0.58
0.8
76.3
32.2
Minor 5ss
43.2
-0.7
2.4
52.2
38.7
Minor BPS
51.9
0.14
1.7
69.54
40.3

Associated Gene:

Gene:
PHYKPL
Ensembl Gene ID:
ENSAPLG00000014272
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014876
14453485 - 14462476
8992