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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14458323_14458541_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14458323 - 14458541
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
ACCTATGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATGAT
U12 Branch Point Sequence:
CGTGTCCAAACA
Flanking Amino Acid:
IEQAHKKGRKIAAFFAESLP
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
76.2
39.9
Major BPS
63.3
0.33
1.1
53.7
41.6
Major PPT
73
0.52
1
68.9
41.1
Minor 5ss
39.9
-1.1
3.4
55
49.2
Minor BPS
44.7
-0.4
2
55.78
43.5

Associated Gene:

Gene:
PHYKPL
Ensembl Gene ID:
ENSAPLG00000014272
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014876
14453485 - 14462476
8992