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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14458625_14458907_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14458625 - 14458907
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TGTTATGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GTATACTAAAAG
Flanking Amino Acid:
PPAGYFQKVAEHVHKAGAVF
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.1
65
40.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
79.3
0.66
1
72.4
42.2
Minor 5ss
34.3
-1.8
3.2
40.1
40
Minor BPS
47.8
-0.3
2
55.74
44.6

Associated Gene:

Gene:
PHYKPL
Ensembl Gene ID:
ENSAPLG00000014272
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014876
14453485 - 14462476
8992