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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14459134_14459402_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14459134 - 14459402
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCTGAACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAACT
Flanking Amino Acid:
AATGVEYFNTFGGNPVSCAI
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72.7
0.51
1
70.7
38.9
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
75.4
0.88
1.4
88.41
36.6

Associated Gene:

Gene:
PHYKPL
Ensembl Gene ID:
ENSAPLG00000014272
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014876
14453485 - 14462476
8992