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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14460500_14460907_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14460500 - 14460907
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTACTG
5'SS Class:
major
3'SS Sequence:
TTTGTCCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAA
U12 Branch Point Sequence:
ATGAGTTTAAGT
Flanking Amino Acid:
VVDTIDRLLTDMEEQQLNQD
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
59.4
45.2
Major BPS
63.3
0.33
1.1
55.4
41.7
Major PPT
79
0.65
0.8
71
36
Minor 5ss
34.6
-1.8
3.4
48.1
47.4
Minor BPS
48.1
-0
2.1
66.41
44.6

Associated Gene:

Gene:
PHYKPL
Ensembl Gene ID:
ENSAPLG00000014272
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014876
14453485 - 14462476
8992