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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14465573_14467118_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14465573 - 14467118
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTGTTCTTCATT
Flanking Amino Acid:
KKFHNVSGSKCEIKVAQPKE
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.3
0.84
0.7
85
28.5
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
66.4
0.6
1.7
82.85
39.2

Associated Gene:

Gene:
HNRNPAB
Ensembl Gene ID:
ENSAPLG00000014040
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039572
14465055 - 14471434
6380
ENSAPLT00000014634
14446760 - 14471434
24675