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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14467251_14467669_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14467251 - 14467669
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCATGTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAAACTGCAAGT
Flanking Amino Acid:
IREYFGEFGEIEAIELPMDP
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
74
36.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.1
0.68
0.9
77
37.1
Minor 5ss
36.7
-1.5
2.6
45.3
42.8
Minor BPS
41.1
-0.6
2.3
58.91
44

Associated Gene:

Gene:
HNRNPAB
Ensembl Gene ID:
ENSAPLG00000014040
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039572
14465055 - 14471434
6380
ENSAPLT00000024738
14446822 - 14471434
24613
ENSAPLT00000014634
14446760 - 14471434
24675