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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14467829_14467914_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14467829 - 14467914
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTTA
5'SS Class:
strong_major
3'SS Sequence:
AACCACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTAATCTTATCA
Flanking Amino Acid:
LFKEPGSVEKVLEQKEHRLD
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
82.6
24.8
Major BPS
79
0.72
1
80.3
31.7
Major PPT
65.3
0.34
1
59.4
40.5
Minor 5ss
37.7
-1.4
3
49
47.2
Minor BPS
62.7
0.39
1.6
72.74
38.9

Associated Gene:

Gene:
HNRNPAB
Ensembl Gene ID:
ENSAPLG00000014040
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039572
14465055 - 14471434
6380
ENSAPLT00000024738
14446822 - 14471434
24613
ENSAPLT00000014634
14446760 - 14471434
24675