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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14480837_14482634_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14480837 - 14482634
Intron Length:
1798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGAC
5'SS Class:
major
3'SS Sequence:
TTATTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
ILRSGFLIVQKRKLQLSPEQ
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
69.5
35.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
36.3
-1.6
3.4
49.9
46.6
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
NME5
Ensembl Gene ID:
ENSAPLG00000013940
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014522
14480708 - 14487013
6306