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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14482841_14483223_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14482841 - 14483223
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACCAAA
U12 Branch Point Sequence:
GCCTACCAAACA
Flanking Amino Acid:
SIKARRTHPHSLRAIYGTDE
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1.1
72.3
39.5
Major BPS
54.9
0.12
1.2
63
32
Major PPT
79
0.65
0.8
76.9
31.9
Minor 5ss
40.1
-1.1
2.9
52.9
44.3
Minor BPS
44
-0.4
2.1
53.55
44.5

Associated Gene:

Gene:
NME5
Ensembl Gene ID:
ENSAPLG00000013940
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014522
14480708 - 14487013
6306