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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14483325_14484335_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14483325 - 14484335
Intron Length:
1011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGG
5'SS Class:
major
3'SS Sequence:
TTACTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAA
U12 Branch Point Sequence:
TTACTCTTTACA
Flanking Amino Acid:
EREIRFMFPEVILEPIPAGQ
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.9
Major BPS
61
0.27
1.1
69.2
36.3
Major PPT
85.6
0.8
0.8
80.1
31.7
Minor 5ss
36.7
-1.5
3.1
47.6
47.9
Minor BPS
63.3
0.41
1.6
73.43
37.6

Associated Gene:

Gene:
NME5
Ensembl Gene ID:
ENSAPLG00000013940
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014522
14480708 - 14487013
6306