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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14506913_14507926_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14506913 - 14507926
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
CTTTTCTACCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACTTCTTCACCT
Flanking Amino Acid:
NLHNNEVGRLAVKATMKRAC
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
68.9
37.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80
0.68
0.8
73.5
36.1
Minor 5ss
36.1
-1.6
3
47.1
42.6
Minor BPS
55.7
0.26
1.8
74.15
43

Associated Gene:

Gene:
WNT8A
Ensembl Gene ID:
ENSAPLG00000013549
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014127
14506352 - 14509793
3442