About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14543715_14544134_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14543715 - 14544134
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCCTTTTAACA
Flanking Amino Acid:
RHVVDYIEEHGGLEQEGLFQ
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74
0.54
0.9
69.1
34.7
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
71.9
0.68
1.2
75.92
35.5

Associated Gene:

Gene:
FAM13B
Ensembl Gene ID:
ENSAPLG00000013261
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035829
14542464 - 14576622
34159
ENSAPLT00000033422
14542464 - 14576481
34018
ENSAPLT00000013833
14542464 - 14576622
34159