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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14544348_14545980_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14544348 - 14545980
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATTT
Flanking Amino Acid:
LHTHLMQLSQDYNNEDEFGR
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.7
0.85
0.7
81.5
35.9
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
60.2
0.4
1.5
74.31
37.1

Associated Gene:

Gene:
FAM13B
Ensembl Gene ID:
ENSAPLG00000013261
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013833
14542464 - 14576622
34159
ENSAPLT00000035829
14542464 - 14576622
34159
ENSAPLT00000033422
14542464 - 14576481
34018