About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14549756_14556423_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14549756 - 14556423
Intron Length:
6668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTTCTTTATT
Flanking Amino Acid:
SDSRSVTASTSAHLSPISIL
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
81.6
33.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
85.1
28
Minor 5ss
49.4
-0
2.9
73.9
42.6
Minor BPS
68.2
0.65
1.6
83.06
38.5

Associated Gene:

Gene:
FAM13B
Ensembl Gene ID:
ENSAPLG00000013261
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033422
14542464 - 14576481
34018
ENSAPLT00000013833
14542464 - 14576622
34159
ENSAPLT00000035829
14542464 - 14576622
34159