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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14559890_14562148_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14559890 - 14562148
Intron Length:
2259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CCATTCTTAAAT
Flanking Amino Acid:
VLALPSAQVKAADVLLKRCD
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
78.7
0.65
0.9
74.4
35.3
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
65.8
0.57
1.4
73.39
43.4

Associated Gene:

Gene:
FAM13B
Ensembl Gene ID:
ENSAPLG00000013261
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035829
14542464 - 14576622
34159
ENSAPLT00000033422
14542464 - 14576481
34018
ENSAPLT00000013833
14542464 - 14576622
34159