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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14562217_14562938_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14562217 - 14562938
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATGCATTTAAAG
Flanking Amino Acid:
AEVDGENNSERQNSILAGGS
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.9
0.65
0.9
76.8
37.4
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
49
-0.2
1.7
53.68
40.9

Associated Gene:

Gene:
FAM13B
Ensembl Gene ID:
ENSAPLG00000013261
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013833
14542464 - 14576622
34159
ENSAPLT00000035829
14542464 - 14576622
34159
ENSAPLT00000033422
14542464 - 14576481
34018