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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14569918_14570202_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14569918 - 14570202
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTTTTCCTATTT
Flanking Amino Acid:
DLTKLRKQIKDAKQKSSDGE
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
86.7
0.83
0.7
84.7
28.9
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
60.1
0.4
1.9
84.08
37

Associated Gene:

Gene:
FAM13B
Ensembl Gene ID:
ENSAPLG00000013261
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035829
14542464 - 14576622
34159
ENSAPLT00000033422
14542464 - 14576481
34018
ENSAPLT00000013833
14542464 - 14576622
34159