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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14570897_14574392_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14570897 - 14574392
Intron Length:
3496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAATACTT
5'SS Class:
major
3'SS Sequence:
TGTAATGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATGTCTAATT
Flanking Amino Acid:
LYYESQHGRPGSPSTKRRGQ
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
68.7
42
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73
0.52
1
65.6
45
Minor 5ss
38.4
-1.3
3.3
58.4
45.6
Minor BPS
49.3
0.02
2
70.54
40.6

Associated Gene:

Gene:
FAM13B
Ensembl Gene ID:
ENSAPLG00000013261
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033422
14542464 - 14576481
34018